Authors: Alina Mostovaya, Michael Wind-Hansen, Paul Rousteau, Laura A. Bristow, Bo Thamdrup
The table has been set and the food is all prepared. But this is no ordinary dinner party, it’s a microbe party! The guests sit down and proceed to dig into the main course; sulfur, rusty iron, and methane. Curiously, the guests are feeding each other, not themselves! This image seems pretty weird to us humans, but it’s a delight to these microbes. This collaborative method of eating occurs in pond and lake mud all around the world. In a new study, Mostovaya and colleagues describe one such feast in Danish Lake Ørn, that is not only collaborative but may mitigate climate change.
Featured Image: Rock fracture from the Dresser Formation, Australia. Fluid inclusions are trapped in the white stripes. Image courtesy Ser Amantio di Nicolao, used with permission.
Authors: Helge Mißbach, Jan-Peter Duda, Alfons M. van den Kerkhof, Volker Lüders, Andreas Pack, Joachim Reitner, Volker Thiel
Just a few weeks ago NASA made a historic landing of the Perseverance rover on Mars. This rover symbolizes our human drive for exploration and the need to find the origins of life to answer the big question—are we alone in the universe? In addition to extraterrestrial investigation and research, we can address this fundamental question here on our own planet by digging into extreme environments that are analogs for ancient Earth or other planets. These unusual environments, such as hydrothermal vents in our deepest oceans, boiling hot springs in Yellowstone, and prehistoric lakes in South America, can give us glimpses of ancient information and clues about to the ingredients of life. By discovering our own origins of life, we can begin to understand how it may evolve on other planets.
Authors: Marta Maciejewska, Magdalena Całusińska, Luc Cornet, Delphine Adam, Igor S. Pessi, Sandrine Malchair, Philippe Delfosse, Denis Baurain, Hazel A. Barton, Monique Carnoland Sébastien Rigali
Do you ever think about the microbes around you when you go caving? Me neither, but a team of scientists from Belgium did.
Actinobacteria are found in many places around the world, including volcanic terrains and ice caves. They are of particular importance to cave ecosystems and structure since the formation of speleothems (cave formations) like moon milk is thought to be aided by Actinobacteria. These microbes are known for their ability to produce filaments and aid calcium carbonate deposition and precipitation, which could be important for the mineral deposition that forms speleothems.
Moonmilk deposits from Bergmilchkammer cave (1862/20), courtesy Doronenko and Wikimedia Commons
Despite the importance of microbes in caves, our understanding of microbial communities and spatial distribution within a cave is still fairly limited, i.e. we still don’t know which microbes dominate cave formations and where they live. An international team of scientists set out to answer these questions using three speleothems in the Grotte des Collemboles (English: Springtails’ Cave) in Belgium. Using sterile scalpels, the team scraped soft moonmilk deposits from the walls of the cave into tubes to understand whether different speleothems in the same cave have different bacterial communities.
Using high-throughput DNA sequencing, they found that all the moonmilk deposits had over 700 species in common but distinct communities of bacteria. At least 10% of the species on a particular speleothem were unique to it, and they identified over 4,000 species in total. Actinobacteria was the second-most abundant group (after Proteobacteria) across deposits and many Actinobacterial groups like Nocardia, Pseudonocardia and Streptomyces were found at every speleothem.
Within Actinobacteria, the genus Streptomyces showed the highest diversity (19 species) across all sites even though they only comprised 3% of the actinobacterial community. Interestingly, the team could only grow 5 of these Streptomyces in the lab, which reinforces the significant obstacles to culturing microorganisms still faced by microbiologists.
Streptomyces coelicolor colonies, courtesy Norwich Research Park Image Library
Streptomyces are already a prodigious source of antibiotics and other biologically important compounds, but could these speleothem communities be a source of novel antibiotic compounds? The answer might be worth exploring, given the diversity of Streptomyces found in just this one cave but also the emerging roles of other Actinobacteria in antibiotic production.
The difficulty of growing in situ the bacteria we find in cave formations might complicate our ability to study the compounds they produce, but such adventures could still offer fascinating insights into the microbial inhabitants of caves and how they help bind mineral formations together. The next time you go caving, hopefully you’ll think about the Actinobacteria that surround you!
Authors: Robin L. Vannote, G. Wayne Minshall, Kenneth W. Cummins, James R. Sedell, Colbert E. Cushing
Perhaps last time you went for a hike, you stumbled upon a burbling spring pushing its way up through the leaf litter after a heavy rainfall, creating a tiny rivulet of water crisscrossing over your path before plunging back into the forest. What a find! Excitedly, you squatted down and gently uncovered the spring to notice gnats lazily floating away, some nearby fruiting mushrooms, and great clumps of decomposing twigs and leaves which you assume harbor uncountable numbers of microorganisms. This unique little ecosystem is profiting from the nutrients and water being pushed from the ground, using the opportunity to have a feast. But what happens to the nutrients and carbon that gets past these plants and animals?
Authors: Michael J. Malaska, Rohit Bhartia, Kenneth S. Manatt, John C. Priscu, William J. Abbey, Boleslaw Mellerowicz, Joseph Palmowski, Gale L. Paulsen, Kris Zacny, Evan J. Eshelman, and Juliana D’Andrilli
Like the rings of a tree, core samples extracted from glacial ice preserve a unique record of past events. But instead of recording seasonal growth, the ancient ice sheets of Antarctica and Greenland have preserved the conditions of long gone climates and ecosystems. Some sheets have continuously accumulated so much snowfall over the past series of millennia that in some places the ice can reach depths that are miles deep. Analyzing this immense glacial record can inform us about not just the global patterns of climate change, but also the evolution of microbial life on Earth, and maybe even the icy worlds of our Solar System.
My science textbook taught me that fluorine (F) was really important for dental health, and I’ve since learned that both excessive and insufficient amounts of fluoride in groundwater can cause health issues. While the chemistry behind the release of fluoride ions from rocks or sediments into groundwater is well understood, the microbiology of this process is not. Specifically, scientists have been wondering whether microbes could speed up the release of F from sediments into groundwater.
Stromatolites are ancient, layered deposits of sediments that are characterized by thin, alternating light and dark bands. While microbial fossils have been found in many stromatolites, the biological origin of these structures has been debated. Continue reading “Ancient microbes engineered sedimentary deposits”
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